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    Home » Recipes » Breakfast

    Healthy Pumpkin Chocolate Chip Muffins

    Published: Mar 1, 2023 · Modified: Sep 28, 2023 by Shannon · This post may contain affiliate links · 1 Comment

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    Jump to Recipe Print Recipe

    These delicious Healthy Pumpkin Chocolate Chip Muffins taste like classic pumpkin bread but incorporate Greek yogurt to add some protein and use a combination of all-purpose flour, whole wheat flour and oats to add whole grains and fiber while also maintaining the texture of a traditional muffin.

    A basket of Healthy Pumpkin Chocolate Chip Muffins. this recipe

    Healthy Pumpkin Bread and Pumpkin Muffins are the quintessential fall treats but I'm proposing that we don't limit these delicious baked goods purely to fall, we should enjoy these warm flavors year-round! Regardless of what season you serve them in, these muffins are great for breakfast, snack or even dessert

    If you like these Healthy Pumpkin Chocolate Chip Muffins, you'll also enjoy my Healthy Banana Chocolate Chips Muffins, Chocolate Chip Pancakes and No-Bake Peanut Butter Granola Bars.

    Jump to:
    • Ingredients
    • Instructions
    • Substitutions
    • Variations
    • Equipment
    • Storage
    • Top tip
    • FAQ
    • Related
    • Pairing
    • Recipe
    • Comments

    Ingredients

    Here's what you need to make Healthy Pumpkin Chocolate Chip Muffins:

    Yogurt, brown sugar, butter, rolled oats, sugar, cinnamon, baking soda, an egg, vanilla extract, whole wheat flour, all-purpose flour, pumpkin puree and chocolate chips.
    • plain Greek yogurt
    • brown sugar
    • butter
    • old-fashioned rolled oats
    • granulated sugar
    • cinnamon
    • baking soda
    • egg
    • vanilla
    • whole wheat flour
    • all-purpose flour
    • canned pumpkin puree
    • chocolate chips

    See recipe card for quantities.

    Instructions

    Here's how to make Healthy Pumpkin Chocolate Chip Muffins:

    A bowl with flour, whole wheat flour and rolled oats and a wire whisk.

    1. In a bowl, whisk together the dry ingredients including the two flours, oats and baking soda, then set aside.

    A mixing bowl with the wet ingredients for Healthy Pumpkin Chocolate Chip Muffins added but not mixed.

    2. Cream the butter and sugars together with a mixer for 3 minutes. Then, add the yogurt, eggs, vanilla and pumpkin and mix just until incorporated. Next, stir in the flour mixture.

    A mixing bowl with batter for Healthy Pumpkin Chocolate Chip Muffins with the chocolate added but not stirred.

    3. Stir in the chocolate chips.

    A pan of unbaked muffins ready to go in the oven.

    4. Pour ¼ cup of batter into lined muffin cups and bake at 350 for 22 minutes, or until the muffins are done. Cool on the counter for an hour before storing in an airtight container.

    Hint: To ensure these healthy pumpkin muffins are done, cook them until a toothpick inserted in the center comes out mostly clean, with just a few crumbs. If it has some wet batter, return the muffins to the oven for a few additional minutes. (Or try one of these other methods to see if your muffins are done.)

    Substitutions

    Want to substitute an ingredient in these Healthy Pumpkin Chocolate Chip Muffins? Here's how:

    • Yogurt - use an equal amount of sour cream or butter in place of the yogurt.
    • Chocolate chips - substitute an equal amount of chopped pecans or walnuts for the chocolate chips or any other variety of chocolate chips or mini chocolate chips in place of the semi-sweet chips.
    • Sugar - use an equal amount of alternative sweetener in place of the sugar such as stevia or coconut sugar.
    • Whole wheat flour - double the all-purpose flour and eliminate the whole wheat flour.
    • All-purpose flour - double the whole wheat flour and eliminate the all-purpose flour, the texture will be a little bit more gritty this way but the flavor will still be delicious!

    Variations

    Try one of these variations of Healthy Pumpkin Chocolate Chip Muffins:

    • Banana - substitute 2 bananas in place of the pumpkin puree and reduce each of the sugars to ½ cup.
    • Apple sauce - substitute an equal amount of unsweetened apple sauce in place of the pumpkin puree and reduce each of the sugars to ½ cup.

    Equipment

    These tools can be helpful for making this Healthy Pumpkin Muffin recipe:

    • wire whisk
    • stand mixer
    • muffin pan
    • muffin liners

    Storage

    Store these Healthy Pumpkin Chocolate Chip Muffins in an airtight container at room temperature for up to 4 days, adding a paper towel both under and on top of the muffins to absorb excess moisture. Or store them in the refrigerator for up to 5 days. They also freeze well for up to 90 days.

    Top tip

    These Healthy Chocolate Pumpkin Muffins and great at room temperature or straight out of the fridge but my family likes them best warm so that the chocolate is gooey. Therefore, we like to microwave our muffins for 10-12 seconds a piece before enjoying one.

    FAQ

    How many calories in a homemade pumpkin muffin?

    That's going to depend on the recipe and ingredients used. This Healthy Pumpkin Chocolate Chip Muffin recipe produces a muffin with calories.

    Related

    Looking for more easy bread recipes like this? Try these:

    • A basket of Healthy Banana Chocolate Chip Muffins.
      Healthy Banana Chocolate Chip Muffins

    Pairing

    Pair these Healthy Pumpkin Chocolate Chip Muffins with one of these breakfast recipes for a balanced meal the whole family will love:

    • A cooked Ham and Cheese Crustless Quiche in a pie dish cut into 6 pieces with one slice removed.
      Ham and Cheese Crustless Quiche
    • A bowl of Chocolate Peanut Butter Chia Pudding.
      Chocolate Peanut Butter Chia Pudding
    • A pan of sliced Peanut Butter Cheerios Bars.
      Peanut Butter Cheerio Bars
    • A Savory Cottage Cheese Bowl with cottage cheese, smoked salmon, diced cucmbers, sliced tomatoes, diced red onion, capers and Everything but the Bagel Seasoning.
      Savory Cottage Cheese Bowl

    Recipe

    A basket of Healthy Pumpkin Chocolate Chip Muffins.

    Healthy Pumpkin Chocolate Chip Muffins

    Shannon
    These Healthy Pumpkin Chocolate Chip Muffins taste like classic pumpkin bread but incorporate Greek yogurt to add some protein and use a combination of all-purpose, whole wheat flour and oats to add whole grains and fiber while also maintaining the texture of a traditional muffin.
    5 from 1 vote
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 22 minutes mins
    Total Time 32 minutes mins
    Course Breakfast, Snack
    Cuisine American
    Servings 18 people
    Calories 241 kcal

    Equipment

    • 1 wire whisk
    • 1 stand mixer
    • 1 muffin pan
    • muffin liners

    Ingredients
      

    • 1 cup whole wheat flour
    • 1 cup all-purpose flour
    • 1 cup rolled oats
    • 1 teaspoon baking soda cu
    • 1 teaspoon cinnamon
    • ½ cup butter
    • 1 cup granulated sugar
    • 1 cup brown sugar
    • 1 cup pumpkin puree
    • ½ cup plain Greek yogurt
    • 1 egg
    • 1 teaspoon vanilla extract
    • ½ cup semi-sweet chocolate chips

    Instructions
     

    • Preheat the oven to 350.
    • In a bowl, whisk together the two flours, oats and baking soda, then set aside.
    • Cream the butter and sugar together with a mixer on medium speed for 3 minutes.
    • Add the pumpkin, yogurt, egg and vanilla and mix just until incorporated.
    • Stir in the flour mixture until just incorporated.
    • Stir in the chocolate chips.
    • Pour ¼ cup of batter into lined muffin cups and bake at 350 for 22 minutes, or until the muffins are done and a toothpick inserted in the center comes out with just a few crumbs and no wet batter.
    • Allow the muffins to cool at least 5 minutes prior to eating. Cool them at room temperature for at least 1 hour prior to storing in an airtight container.

    Notes

    These healthy pumpkin muffins and great at room temperature or straight out of the fridge but my family likes them best warm so that the chocolate is gooey. Therefore, we like to microwave our muffins for 10-12 seconds a piece before enjoying one.

    Nutrition

    Calories: 241kcalCarbohydrates: 40gProtein: 4gFat: 8gSaturated Fat: 5gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gTrans Fat: 0.2gCholesterol: 23mgSodium: 112mgPotassium: 134mgFiber: 2gSugar: 26gVitamin A: 2293IUVitamin C: 1mgCalcium: 33mgIron: 1mg
    Keyword healthy pumpkin chocolate chip muffins, healthy pumpkin muffins, pumpkin chocolate chip muffins, pumpkin muffins
    Tried this recipe?Let us know how it was!

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      Recipe Rating




    1. Shannon

      March 14, 2023 at 11:52 am

      5 stars
      Kids and adults all LOVE these!

      Reply

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    Hi, I'm Shannon! I’m a work-at-home wife and mom to 3 active boys. Our family recently relocated to Columbus, Ohio and are making our home in the Midwest. Since a young age, I’ve had a deep love for food, with many of my favorite memories revolving around sharing a meal with special people.

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